SD8.1 Programming Snakemake Workflows

Requirements

Develop Snakemake workflows by utilising rules, input/output files, and directives such as shell, script, run, “wrappers”, and resource definitions.
Integrate custom Python scripts into Snakemake workflows for dynamic data manipulation and resource parameterization.
Handle automatic software deployment using Conda, or software provisioning with Apptainer/Singularity or module files.
Modularize existing Snakemake workflows into semantic units to improve maintainability and scalability.